Περίληψη:
Specifications Organism/cellline/tissueVitis viniferacv. PN40024 Sex Hermaphrodite
Sequencer or array type The scaffold sequences were obtained by whole genome sequencing using the Sanger technology on ABI3730xl sequencers (Applied BioSystems) according to the supplementary information of Jaillon et al., Nature, 2007, 449: 463–468, doi: http://dx.doi.org/10.1038/nature06148.
Genotype data were obtained from the GrapeReSeq 20K Vitis genotyping chip (https://urgi.versailles.inra.fr/Species/Vitis/GrapeReSeq_Illumina_20K) following the Infinium HD Assay Ultra Protocol (Ilumina Inc.).
The V. vinifera cv. Kishmish vatkana mate pair sequences were produced using an Illumina HiSeq 2500 sequencer (Illumina Inc.).
Data format Analyzed
Experimental factors Three mapping populations were used:
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120 individuals derived from two reciprocal crosses between V. vinifera cv. Riesling cl.49 and V. vinifera cv. Gewürztraminer cl.643 (Ri × Gw)
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358 individuals derived from a cross between V. vinifera cv. Chardonnay and Vitis spp. ‘Bianca’ (Ch × Bi)
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192 individuals derived from two reciprocal crosses between V. vinifera cv. Syrah and V. vinifera cv. Grenache (Sy × Gr)
Experimental features Grapevine reference genome assembly and annotation
V. vinifera cv. Kishmish vatkana was used for the generation of mate pair sequences.
Consent Creative commons non copy left (cc-by): the data can be freely re-used at the condition to cite its authors
Sample source location The Ri × Gw and the Sy × Gr populations were maintained in experimental units of the Institut National de la Recherche Agronomique (INRA), respectively the Service Experimentation Agricole et Viticole (Colmar, France) and the Domaine de Vassal (Marseillan-Plage, France). The Ch × Bi population and the V. vinifera cv. Kishmish vatkana variety (VIVC no. 6277) were maintained in the germplasm collection of the University of Udine at the Experimental Farm A. Servadei (Udine, Italy).
Αναφορά NLM:
Canaguier A, Grimplet J, Di Gaspero G, Scalabrin S, Duchêne E, Choisne N, Mohellibi N, Guichard C, Rombauts S, Le Clainche I, Bérard A, Chauveau A, Bounon R, Rustenholz C, Morgante M, Le Paslier MC, Brunel D, Adam-Blondon AF. A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3). Genom Data. 2017 Sep 18;14:56-62. doi: 10.1016/j.gdata.2017.09.002. PMID: 28971018; PMCID: PMC5612791.